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MZmine 3 Documentation

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MZmine 3 Documentation

mzmine/mzmine_documentation

Home page
Getting started
Learners corner
Main window overview
Processing wizard
Data conversion
Performance options
Command line tool (batch mode)
Integration to other tools
Citations
Processing modules
Processing modules
- I/O
  I/O
- File merging
  File merging
  - Raw data files merging
  - Mobility scan merging
- Raw data filtering
  Raw data filtering
- Mass detection
  Mass detection
- LC-MS feature detection
  LC-MS feature detection
- LC-IMS-MS feature detection
  LC-IMS-MS feature detection
- MS imaging feature detection
  MS imaging feature detection
  - Image builder
- Smoothing
- Resolving
  Resolving
- Spectral deconvolution (GC)
  Spectral deconvolution (GC)
  - Hierarchical clustering
  - Multivariate curve resolution
- CCS calibration
- MS2 scan pairing
- MALDI MS2 scan pairing (SIMSEF)
- Isotope filtering
  Isotope filtering
- Feature list filtering
  Feature list filtering
- Alignment
  Alignment
- Gap filling
  Gap filling
  - Peak finder
  - Same RT and m/z range gap filler
- Normalization
  Normalization
- Precursor mass search
  Precursor mass search
- Spectra search
  Spectra search
- Other parameters
  Other parameters
  - Merge MS/MS
  - Spectra similarity
Visualization modules
Visualization modules
- Visualization overview
- MS data visualisation
  MS data visualisation
  - Raw data overview
  - Additional tools
- Ion mobility data visualisation
- Image viewer
- Processed data visualition
  Processed data visualition
- Massvoltammogram
Workflows
Workflows
Tools
Tools
- SIMSEF scheduler
Additional resources
Additional resources
Contribute
Contribute
Acknowledgements
Troubleshooting
Changelog
Workshops

Citations¶

How to cite different parts of MZmine: Workflows, tools, etc.

Last update: October 20, 2022 16:56:06

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