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mzmine documentation

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Home page
Getting started
User account
Learners corner
Main window overview
Processing wizard
Data conversion
Performance options
Command line tool (batch mode)
Integration to other tools
Processing modules
Processing modules
- I/O
  I/O
- File merging
  File merging
  - Raw data files merging
  - Mobility scan merging
- Raw data filtering
  Raw data filtering
- Mass detection
  Mass detection
- LC-MS feature detection
  LC-MS feature detection
- LC-IMS-MS feature detection
  LC-IMS-MS feature detection
- MS imaging feature detection
  MS imaging feature detection
  - Image builder
- Smoothing
- Resolving
  Resolving
- Spectral deconvolution (GC)
  Spectral deconvolution (GC)
  - GC-EI spectral deconvolution
- CCS calibration
- MS2 scan pairing
- MALDI MS2 scan pairing (SIMSEF)
- Isotope filtering
  Isotope filtering
- Feature grouping
  Feature grouping
- Feature list filtering
  Feature list filtering
- Alignment
  Alignment
- Gap filling
  Gap filling
  - Peak finder
  - Same RT and m/z range gap filler
- Normalization
  Normalization
- Precursor mass search
  Precursor mass search
  - Local database search
  - Precursor search in local spectral MS/MS library
- Spectra search
  Spectra search
- Other parameters
  Other parameters
  - Merge MS/MS
  - Spectra similarity
Visualization modules
Visualization modules
- Visualization overview
- MS data visualisation
  MS data visualisation
  - Raw data overview
  - Additional tools
- Ion mobility data visualisation
- Image viewer
- Image co-localization
- Processed data visualition
  Processed data visualition
- Massvoltammogram
Workflows
Workflows
Tools
Tools
- SIMSEF scheduler
Additional resources
Additional resources
Contribute
Contribute
- Coding
  Coding
- Contribute to documentation
- Documentation template
Acknowledgements
Troubleshooting
Changelog
Workshops

Citations¶

How to cite different parts of mzmine: Workflows, tools, etc.

Last update: November 19, 2024 09:27:48

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