Integration to other tools¶
Overview¶
MZmine3 data can be easily exchanged with and integrated into other software and web services, allowing to perform additional downstream analysis. Multiple export modules in MZmine3 allow to transfer its results with great flexibility.
Links to the detailed documentation and specifications are provided in the table.
| Tool | Doc | Applicable MZmine module(s) | Format | Description |
|---|---|---|---|---|
| SIRIUS | Doc | Export to SIRIUS | .mgf | Contains MS2 spectra and MS1 or correlated MS1 spectra for each feature list row |
| GNPS-FBMN GNPS-IIMN |
FBMN IIMN |
Export/submit GNPS-FBMN | .mgf _quant.csv _edges.csv |
- Contains one representative MS2 spectrum per feature - The feature list as an intensity (area/height) matrix - The additional IIN edges between features |
| GNPS-GC-MS | Doc | Export to GNPS-GC-MS | .mgf _quant.csv |
- Contains one representative correlated GC-MS1 spectrum per feature - The feature list as an intensity (area/height) matrix |
| MetaboAnalyst | Doc | Export to MetaboAnalyst | .csv | Metadata grouped feature intensity matrix (area/height) |
| R, Python general purpose export |
Export to CSV (legacy) Export to CSV (modular) |
.csv | Export any row (averaged) and feature (per sample) types to a tabular format. Export all columns from the feature table to a tabular format. |
|
| tidyMass | Doc | Export to CSV (legacy) | .csv | Export any row (averaged) and feature (per sample) types to a tabular format |
| MetDNA | Doc | GNPS-FBMN/IIMN export | .csv | Export any row (averaged) and feature (per sample) types to a tabular format |
| NeatMS | Doc | Export to CSV (legacy) | .csv | Export any row (averaged) and feature (per sample) types to a tabular format |
| NetID | Doc | Export to CSV (legacy) | .csv | Export any row (averaged) and feature (per sample) types to a tabular format |
| mzRAPP | Doc | Export to CSV (legacy) | .csv | Export any row (averaged) and feature (per sample) types to a tabular format |
| MetGem | Doc | MSP Export MGF Export |
.msp .mgf |
|
| TIMA | Doc | Export/submit GNPS-FBMN | _quant.csv _edges.csv |
- The feature list as an intensity (area/height) matrix - The additional IIN edges between features |
| Inventa | Doc | Export/submit GNPS-FBMN / Export to Sirius | .mgf _quant.csv _edges.csv |
- Contains one representative MS2 spectrum per feature - The feature list as an intensity (area/height) matrix - The additional IIN edges between features |
| MEMO | Doc | Export/submit GNPS-FBMN | .mgf | - Contains one representative MS2 spectrum per feature |
| SLAW | Doc | Export/submit GNPS-FBMN | .mgf _quant.csv _edges.csv |
- Contains one representative MS2 spectrum per feature - The feature list as an intensity (area/height) matrix - The additional IIN edges between features |
| FERMO | Doc | Export/submit GNPS-FBMN | .mgf _quant.csv |
- Contains one representative MS2 spectrum per feature - The feature list as an intensity (area/height) matrix |
Page Contributors¶
Last update:
September 19, 2023 12:17:07