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Histogram plot

Description

Visualization → Histogram plot

This plot displays a graphic representation of frequencies. Each rectangle represents an interval of frequency. The height is also equal to the frequency density in that interval. The total area of the histogram is equal to the number of data. This tool can use the m/z value, height, area or retention time as frequency value (X axis) and number of peaks in each interval (Y axis).

Parameters

Raw data files

Column of peaks to be plotted.

Plotted data type

Peak's data to be plotted ( m/z value, height, area or retention time)

Plotted data range

Range of data to be plotted. This range is automatically loaded with max values from the raw data.

Number of bins

The plot is divides into this number of bins.

Functionality

This plot is using the third part library JfreeChart for its basic functionality.

To zoom in, drag the mouse from left to right, selecting the area to zoom. To zoom out drag the zoom from right to left.

The next figure shows a histogram using the retention time value. This data is coming from a raw data with a duration of 60 min. Most of the peaks appears around 17 min.

RT histogram

The next figure shows a histogram using the m/z value. This data is coming from a raw data with a range from 350 to 1400 m/z.

mz histogram

omokshyna


Last update: November 24, 2022 21:13:07