Ion Identity Networking and Feature-based Molecular Networking on the GNPS web-platform

The GNPS FBMN export function in MZmine creates all files from a feature table, that are needed to perform Feature-based Molecular Networking (FBMN) on GNPS. Extensive documentation is available on the GNPS documentation site..
Ion Identity Networking (IIN) in MZmine adds a new way to connect features in molecular networks, based on MS1 analysis of ion species (different adducts and in-source fragments of the same compound). Refer to this part of the GNPS documentation on how to combine IIN and FBMN within MZmine and GNPS. The latest IIN enabled MZmine version can be downloaded HERE.