Download MZmine 3The latest stable MZmine 3 release can be downloaded here. A list of all releases, also containing nightly builds can be found here.
For details about the new features in each release, please see the change log.
Recommended system requirementsMZmine 3 is a modern Java software that is packaged with its own runtime. Therefore, it is not needed to install Java on the target system. Older releases of MZmine 2 require Java 8 or higher for 64-bit.
64-bit CPU with 4 or more cores
4 GB RAM (The more the better)
(Optional) Install R. R is required for certain modules (e.g. baseline correction and heat maps).
(Optional) Install the required R packages using the following commands in the R console:
install.packages(c("Rserve", "ptw", "gplots", "baseline", "hyperSpec", "ggplot2","boot"))
if (!requireNamespace("BiocManager", quietly = TRUE))
MZmine 3 Installation
Download the latest MZmine version from here. Installers and portable versions are provided for each system.
Mac OS X
Adjust to define the total amount of memory available to MZmine
Location where temporary files will be stored
Adjust if you wish to run a specific Java Virtual Machine (Usually not necessary to modify)