User Documentation

We are working on a new website, documentation, and resources for MZmine 3. Most of the listed resources were created with MZmine 2 and have some applicability to MZmine 3. The following documentation is available for getting familiar with MZmine 2 and its architecture. If you have further questions regarding the usage or development of MZmine, please contact the developers.

Developer Documentation

  • How to start MZmine development using Eclipse or IntelliJ IDEA
    These tutorials show how to setup the development environment using the IDE and how to start developing modules for MZmine.

  • Module development tutorial
    This (slighly outdated) tutorial is intended for researchers who wish to implement their own data processing methods within the MZmine 2 framework. It covers the development of a simple MZmine 2 module.